PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112375.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 288aa    MW: 32938.2 Da    PI: 8.4802
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112375.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.8e-05137159223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+++++++ +L  Hi+  H
  XP_010112375.1 137 SCSVCSRVYPTSRLLSIHISEaH 159
                     6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552.1109134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280111134IPR007087Zinc finger, C2H2
SMARTSM003555136159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138159IPR007087Zinc finger, C2H2
SMARTSM003550.45174199IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280176199IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MMVKDPSQPS RLPLKYCDQC PFFTDSVKTK AKANTEAISN SVAMDVEETQ LELGFPCWIP  60
VRRRFDPDSP FFASGNIERE LLAKQVALDL TEDEKHYLRN FVDEDFRGVF CSIVGCDARL  120
TSLEDFEDHY NARHTASCSV CSRVYPTSRL LSIHISEAHD SFFQAKVARG YEMYQCLVEG  180
CSLKFKTYKS RHQHLVDKHK FPSSFEFFKK AHPSKKQRQK QQRKQSINKK ADASSMEVEN  240
EAIDDLVSAV SKLSTSDSPS SISFGRRHTR GLTFVPRAVQ RDKRPDST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214220KKQRQKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112375.10.0Zinc finger protein 511
TrEMBLW9SYV00.0W9SYV0_9R
STRINGVIT_14s0068g01930.t011e-139(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-116zinc ion binding;nucleic acid binding;zinc ion binding